Molecular and Materials Modelling (MMM)
Each module has to be completed with 8 credit points.
2nd (summer) semester module
Module 1. Molecular and Materials Modelling 1
ID: MMM1
Compulsoriness: Compulsory
ECTS credits: 8
Workload: 240 hours
Duration of Module: 1 semester
Semester: Summer (2nd)
Qualification goals: Students are able to describe material properties from the microscopic to the macroscopic scale. They are acquainted with the fundamental concepts of quantum mechanics, thermodynamics and essential knowledge in quantum chemistry and statistical thermodynamics.
Assessment Measures: oral examination (30 minutes), unrestrictedly repeatable. The ungraded presentation (80403) is required for the registration for the final module exam.
Components of the Module
MMM1-a. "Atomic and Molecular Structure"
Compulsoriness: Compulsory
Form of Study: Lectures and exercises
Weekly Hours: 2
Overall Workload: 90 hours
Contents: Basic quantum mechanics, wave functions, operators, expectation values. Time-independent Schrödinger equation. Particle in a box, Quantum harmonic oscillator, Hydrogen atom. Variational principle. Born-Oppenheimer approximation. Chemical bonding: Valence bond and Molecular orbital theory. The Hückel approximation.
MMM1-b. "Macroscopic Materials Properties"
Compulsoriness: Compulsory
Form of Study: Lectures and exercises
Weekly Hours: 2
Overall Workload: 90 hours
Contents: The three laws of thermodynamics. Temperature, entropy and thermodynamic potentials. Applications of thermodynamics: phase transitions, vdW EOS, osmotic pressure. Kinetic theory. The Gibbsian ensemble and Liouville's theorem. The Maxwell-Boltzmann distribution. Microcanonical, canonical and grandcanonial ensembles. Monte Carlo simulations (possible exercise: van der Waals fluid).
MMM1-c. "Seminar on molecular and materials properties"
Compulsoriness: Compulsory
Form of Study: Seminar
Weekly Hours: 1
Overall Workload: 30 hours
Description: The student will present a current paper or selected topic with relevance to molecular or materials modelling in a short seminar.
MMM1-d. "Exercises on quantum chemistry and thermodynamics"
Compulsoriness: Compulsory
Form of Study: Exercises
Weekly Hours: 1
Overall Workload: 30 hours
Contents: The fundamental concepts of quantum chemistry, and classical and statistical thermodynamics from the components MMM1-a and MMM1-b will be practiced in dedicated exercises.
3rd (winter) semester module
Module 2. Molecular and Materials Modelling 2
ID: MMM2
Compulsoriness: Compulsory
ECTS credits: 8
Workload: 240 hours
Duration of Module: 1 semester
Semester: Winter (3rd)
Qualification goals: The students learn and apply numerical methods for the simulations of materials at the molecular level. The necessary concepts in quantum chemistry and molecular dynamics are presented and the students acquires skills to perform atomistic simulations of complex systems using modern software.
Assessment Measures: Presentation with Colloquium (60 minutes, 8 ECTS), unrestrictedly repeatable.
Components of the Module
MMM2-a. "Methods in Molecular and Materials Modelling"
Compulsoriness: Compulsory
Form of Study: Seminar
Weekly Hours: 3
Overall Workload: 120 hours
Contents: Linear combination of atomic orbitals. Hartree-Fock (HF) approximation. Post-HF methods. Periodic boundary conditions. Basis sets: plane waves, atom-centered Gaussian. Kohn Sham Density functional theory (DFT). Potential energy surfaces. Vibrational analyses: The Hessian. Electronically excited states with linear-response time-dependent DFT. Continuum models for solvation. Molecular dynamics (MD) algorithms. Born-Oppenheimer and Car-Parrinello MD. Empirical force fields. Multiscale simulations. Free energy methods. Methods for kinetics.
MMM2-b. "Practical Molecular and Materials Modelling"
Compulsoriness: Compulsory
Form of Study: Exercises
Weekly Hours: 2
Overall Workload: 120 hours
Description: Working on a project using the practical methods learned. The project will be documented and presented in the form of a poster (including an abstract).
Contents: Selected applications of the methods introduced in component MMM2-a using modern software, e.g.: Turbomole, Pyscf/Psi4 (Python coding), CPMD, Gromacs, LAMMPs, visualization software.
Last modified: 23.07.2026